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R

Tidyverse

Python

Git

Docker

Bash



Highly experienced in designing and maintaining bioinformatic pipeline for large scale whole genome sequencing data

Disclaimer

This resume was made with the R package pagedown.

Source code available at: github.com/danangcrysnanto/cv.

Last updated on 2019-11-19.

Main

Danang Crysnanto

Interested in the bioinformatics of the large-scale whole-genome sequencing data. Current work first to propose the transition from linear to more representative, graph-based reference genome for unbiased sequence variant analysis.

Education

PhD Candidate

Zurich Switzerland

ETH Zurich

Current - 2018

  • Research project: Graph based sequence variant analysis
  • Skills learned: Bioinformatics pipeline management for whole genome data, Graph analytic
  • Adviser: Prof.Dr. Hubert Pausch

Msc in Genome Analysis

Ediburgh United Kingdom

University of Edinburgh

2017 - 2016

  • Thesis: Widespread gene duplication in Drosophila RNAi pathways
  • Skill learned: Pylogenetic analysis, Bayesian statistics
  • Adviser: Dr. Darren Obbard
  • Selected as the best master thesis in population and quantitative genetics

Selected Publications

Accurate sequence variant genotyping using variation-aware genome graphs

Genetic Selection Evolution

N/A

2019

  • Danang Crysnanto Hubert Pausch
  • Published in the first year of PhD
  • First work of using graphs for sequence variant discovery in livestock

Widespread Gene Duplication in RNAi pathways of Drosophila

BMC Evolutionary Biology

N/A

2019

  • Danang Crysnanto Daren Obbard
  • Published from Master’s work
  • Identified massive gene duplications from analysis >30 Drosophila genome

Selected awards

Sir Kenneth Mather Memorial Prize

N/A

UK Genetic Society

2018

  • Awarded annually based on the UK BSc, Msc and PhD thesis with an outstanding work in population genomics and quantitative genetics.

The Douglas Falconer Prize

N/A

University of Edinburgh

2017

  • Awarded as the best master’s thesis

Selected conference and training

Plant and Animal Genomes

San Diego USA

N/A

2020

  • Talk title: Mapping sequencing read to bovine genome graph

Computational Pangenomics

Oeiras Portugal

N/A

2019

  • Training with mini-hackaton on graph genomics

Nextflow for reproducible genomics

Tubingen Germany

N/A

2019

  • Workshop on implementation of reproducible genomics

Cambridge Animal Genomics Conference

Cambridge UK

N/A

2018

  • Talk title: Assessment of the graph-based genotyping with bovine short-read data