Main
Danang Crysnanto
Interested in the bioinformatics of the large-scale whole-genome sequencing data. Current work first to propose the transition from linear to more representative, graph-based reference genome for unbiased sequence variant analysis.
Education
PhD Candidate
Zurich Switzerland
ETH Zurich
Current - 2018
- Research project: Graph based sequence variant analysis
- Skills learned: Bioinformatics pipeline management for whole genome data, Graph analytic
- Adviser: Prof.Dr. Hubert Pausch
Msc in Genome Analysis
Ediburgh United Kingdom
University of Edinburgh
2017 - 2016
- Thesis: Widespread gene duplication in Drosophila RNAi pathways
- Skill learned: Pylogenetic analysis, Bayesian statistics
- Adviser: Dr. Darren Obbard
- Selected as the best master thesis in population and quantitative genetics
Selected Publications
Accurate sequence variant genotyping using variation-aware genome graphs
Genetic Selection Evolution
N/A
2019
- Danang Crysnanto Hubert Pausch
- Published in the first year of PhD
- First work of using graphs for sequence variant discovery in livestock
Widespread Gene Duplication in RNAi pathways of Drosophila
BMC Evolutionary Biology
N/A
2019
- Danang Crysnanto Daren Obbard
- Published from Master’s work
- Identified massive gene duplications from analysis >30 Drosophila genome
Selected awards
Sir Kenneth Mather Memorial Prize
N/A
UK Genetic Society
2018
- Awarded annually based on the UK BSc, Msc and PhD thesis with an outstanding work in population genomics and quantitative genetics.
The Douglas Falconer Prize
N/A
University of Edinburgh
2017
- Awarded as the best master’s thesis
Selected conference and training
Plant and Animal Genomes
San Diego USA
N/A
2020
- Talk title: Mapping sequencing read to bovine genome graph
Computational Pangenomics
Oeiras Portugal
N/A
2019
- Training with mini-hackaton on graph genomics
Nextflow for reproducible genomics
Tubingen Germany
N/A
2019
- Workshop on implementation of reproducible genomics
Cambridge Animal Genomics Conference
Cambridge UK
N/A
2018
- Talk title: Assessment of the graph-based genotyping with bovine short-read data